For a complete set of publications, see Google Scholar or https://www.ncbi.nlm.nih.gov/myncbi/1hU3jjjMv6g5y/bibliography/public/

Wessel RE, Ageeb N, Obeid JM, Mauldin I, Goundry KA, Hossain M, Lehman C, Gentzler RD, Wages NA, Slingluff CL, Bullock TNJ, Dolatshahi S*†, Brown MG† Spatial analysis reveals combinative role for natural killer and CD8 T cells in antitumor immunity despite profound MHC class I loss in non-small cell lung cancer. bioRxiv. 2024, doi: https://doi.org/10.1101/2024.02.20.581048 *corresponding author, †co-senior authors

Wessel RE, Dolatshahi S Quantitative mechanistic model reveals key determinants of placental IgG transfer and informs prenatal immunization strategies. PLoS Comput Biol. 2023 19(11): e1011109. PubMed PMID: 37934786; PubMed Central PMCID: PMC10656024

Nziza N. ♪, Tran TM.♪, DeRiso EA. ♪, Dolatshahi S. ♪, Herman JD., de Lacerda LB., Junqueira C, Lieberman J., Ongoiba A., Doumbo S., Kayentao K., Traore B., Crompton PD., Alter G., Accumulation of neutrophil-phagocytic antibody features tracks with naturally acquired immunity against malaria in children, J. Infect. Dis., 2023 Sep 15;228(6):759-768 doi: 10.1093/infdis/jiad115. PMID: 37150885; PMCID: PMC10503956. ♪These authors share first authorship.

Stahlberg EA, Abdel-Rahman M, Aguilar B, Asadpoure A, Beckman RA, Borkon LL, Bryan JN, Cebulla CM, Chang YH, Chatterjee A, Deng J, Dolatshahi S, Gevaert O, Greenspan EJ, Hao W, Hernandez-Boussard T, Jackson PR, Kuijjer M, Lee A, Macklin P, Madhavan S, McCoy MD, Mohammad Mirzaei N, Razzaghi T, Rocha HL, Shahriyari L, Shmulevich I, Stover DG, Sun Y, Syeda-Mahmood T, Wang J, Wang Q, Zervantonakis I. Exploring approaches for predictive cancer patient digital twins: Opportunities for collaboration and innovation. Front Digit Health. 2022 Oct 6;4:1007784. doi: 10.3389/fdgth.2022.1007784. PMID: 36274654; PMCID: PMC9586248.

Wolfe C., Feng Y., Chen D., Purcell E., Talkington A., Dolatshahi S., Shakeri H. “GeoTyper: Automated Pipeline from Raw scRNA-Seq Data to Cell Type Identification,” 2022 Systems and Information Engineering Design Symposium (SIEDS) 2022. Doi: 10.1109/SIEDS55548.2022.9799321

Dolatshahi S, Butler AL, Siedner MJ, Ngonzi J, Edlow AG, Adong J, Jennewein MF, Atyeo C, Bassett IV, Roberts DJ, Lauffenburger DA, Alter G, Bebell LM. Altered maternal antibody profiles in women with HIV drive changes in transplacental antibody transfer. Clin Infect Dis. 2022 Mar 4;. doi: 10.1093/cid/ciac156. PubMed PMID: 35245365.

Dolatshahi S. ♪ , Butler AL. ♪ , Pou C. ♪ , Henckel E, Bernhardsson AK, Gustafsson A., Bohlin K., Shin SA., Lauffenburger DA, Brodin P*, Alter G* , Selective transfer of maternal antibodies in preterm and fullterm children,  Sci Rep 12, 14937 (2022). https://doi.org/10.1038/s41598-022-18973-4 ♪ These authors share first authorship. *co-corresponding author.

Grace PS♪, Dolatshahi S♪, Lu LL, Cain A, Palmieri F, Petrone L, Fortune SM, Ottenhoff THM, Lauffenburger DA, Goletti D, Joosten SA, Alter G. Antibody Subclass and Glycosylation Shift Following Effective TB Treatment. Front Immunol. 2021;12:679973. doi: 10.3389/fimmu.2021.679973. eCollection 2021. PubMed PMID: 34290702; PubMed Central PMCID: PMC8287567. ♪ These authors contributed equally to the manuscript.

Fischinger S, Dolatshahi S, Jennewein MF, Rerks-Ngarm S, Pitisuttithum P, Nitayaphan S, Michael N, Vasan S, Ackerman ME, Streeck H, Alter G. IgG3 collaborates with IgG1 and IgA to recruit effector function in RV144 vaccinees. JCI Insight. 2020 Nov 5;5(21). doi: 10.1172/jci.insight.140925. PubMed PMID: 33031099; PubMed Central PMCID: PMC7710302.

Chang MM, Gaidukov L, Jung G, Tseng WA, Scarcelli JJ, Cornell R, Marshall JK, Lyles JL, Sakorafas P, Chu AA, Cote K, Tzvetkova B, Dolatshahi S, Sumit M, Mulukutla BC, Lauffenburger DA, Figueroa B Jr, Summers NM, Lu TK, Weiss R. Small-molecule control of antibody N-glycosylation in engineered mammalian cells. Nat Chem Biol. 2019 Jul;15(7):730-736. doi: 10.1038/s41589-019-0288-4. Epub 2019 May 20. PubMed PMID: 31110306.

Jennewein MF, Goldfarb I, Dolatshahi S, Cosgrove C, Noelette FJ, Krykbaeva M, Das J, Sarkar A, Gorman MJ, Fischinger S, Boudreau CM, Brown J, Cooperrider JH, Aneja J, Suscovich TJ, Graham BS, Lauer GM, Goetghebuer T, Marchant A, Lauffenburger D, Kim AY, Riley LE, Alter G. Fc Glycan-Mediated Regulation of Placental Antibody Transfer. Cell. 2019 Jun 27;178(1):202-215.e14. doi: 10.1016/j.cell.2019.05.044. Epub 2019 Jun 13. PubMed PMID: 31204102; PubMed Central PMCID: PMC6741440.

Sumit M, Dolatshahi S, Chu AA, Cote K, Scarcelli JJ, Marshall JK, Cornell RJ, Weiss R, Lauffenburger DA, Mulukutla BC, Figueroa B Jr. Dissecting N-Glycosylation Dynamics in Chinese Hamster Ovary Cells Fed-batch Cultures using Time Course Omics Analyses. iScience. 2019 Feb 22;12:102-120. doi: 10.1016/j.isci.2019.01.006. Epub 2019 Jan 7. PubMed PMID: 30682623; PubMed Central PMCID: PMC6352710.

Dolatshahi S, Voit EO. Identification of Metabolic Pathway Systems. Front Genet. 2016;7:6. doi: 10.3389/fgene.2016.00006. eCollection 2016. PubMed PMID: 26904095; PubMed Central PMCID: PMC4748741.

Dolatshahi S, Fonseca LL, Voit EO. New insights into the complex regulation of the glycolytic pathway in Lactococcus lactis. II. Inference of the precisely timed control system regulating glycolysis. Mol Biosyst. 2016 Jan;12(1):37-47. doi: 10.1039/c5mb00726g. PubMed PMID: 26609780.

Dolatshahi S, Fonseca LL, Voit EO. New insights into the complex regulation of the glycolytic pathway in Lactococcus lactis. I. Construction and diagnosis of a comprehensive dynamic model. Mol Biosyst. 2016 Jan;12(1):23-36. doi: 10.1039/c5mb00331h. Epub 2015 Nov 26. PubMed PMID: 26609637.

Dolatshahi S, Vidakovic B, Voit E. A constrained wavelet smoother for pathway identification tasks in systems biology. Computers & Chemical Engineering. 2014/12; 71:728-733.

A. C. Polak, S. Dolatshahi, D. L. Goeckel. Identifying Wireless Users via Transmitter Imperfections. IEEE Journal on Selected Areas in Communications. 2011; 29(7):1469-1479. doi: 10.1109/JSAC.2011.110812.

Dolatshahi S, Polak A, Goeckel DL. Identification of wireless users via power amplifier imperfections. 2010 Conference Record of the Forty Fourth Asilomar Conference on Signals, Systems and Computers. 2010; :1553-1557. doi: 10.1109/ACSSC.2010.5757798.